rs32523140 SNP Detail

Summary

• ID
  rs32523140
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171042966 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAAGA TCAAGTGTTT TTAACCCTGA
  R
  TTAAAAGTAT CCCTCCAGTC TCTCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45157481	mCV24419634	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
ss119996317	PARCsnp_1.12236	PARC_SEQ	INBRED	f	SNP			A	G
ss119997982	PARCsnp_1.01259	PARC_SEQ	INBRED	f	SNP			A	G
ss146157085	ENSMUSSNP3324263	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss320117251	CHEV_1_173145528	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32523140					SNP	G	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171042966 () rs orientation: forward

Symbol	Name	Function Class
Nr1i3	nuclear receptor subfamily 1, group I, member 3	within coordinates
Rr423243	regulatory region 423243	1366 bp distal
Tomm40l	translocase of outer mitochondrial membrane 40-like	613 bp downstream
Tssr9983	transcription start site region 9983	1390 bp downstream
Tssr9984	transcription start site region 9984	1352 bp downstream