rs32523489 SNP Detail

Summary

• ID
  rs32523489
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:118786429 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATGA GGGCTATTGA AGGACCTACT
  Y
  GTACCCACAC ATTTACTTCT CCATC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47176964	NES11577416	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T		C	C		C	C	T
ss145804508	ENSMUSSNP26723	ENSEMBL	ENSEMBL_Sanger	f	SNP		C					T			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs32523489					SNP	C	C	C	C	C	T	T	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47176964	NES11577416	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:118786429 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19632	CpG island 19632	1647 bp distal
Gm73654	predicted gene, 73654	998 bp downstream
Rr381384	regulatory region 381384	79 bp downstream
Rr654601	regulatory region 654601	1143 bp distal
Rr654602	regulatory region 654602	515 bp distal
Rr654603	regulatory region 654603	618 bp distal