rs32523506 SNP Detail

Summary

• ID
  rs32523506
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:32904173 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGATGCAGT AATCCTTACA ATTTCTTCCT ACACCTGATC
  CTGAATTAAC AAGGTTAACC CTGGCAACTT CATCTGTCCC CCAGGGCCAT AAAACTCTGA
  Y
  ACATAAAGCC CAGACTCTAG AGGTAAGGTG GATGGATGAA CAAGAAAAGC TTCTAACAGC
  CACCACTCAC CCACAGCCTA GAAACCAGGC AGTGCTTTCA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss47677063	NES10272720	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs32523506					SNP	C	C	C	C	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47677063	NES10272720	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:32904173 () rs orientation: forward

Symbol	Name	Function Class
Gm71279	predicted gene, 71279	within coordinates
Pisd	phosphatidylserine decarboxylase	within coordinates
Tssr45794	transcription start site region 45794	705 bp downstream
Tssr45795	transcription start site region 45795	280 bp downstream
Tssr50589	transcription start site region 50589	516 bp upstream
Tssr50590	transcription start site region 50590	488 bp upstream
Tssr50591	transcription start site region 50591	477 bp upstream