rs32523512 SNP Detail

Summary

• ID
  rs32523512
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:32903592 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCAGGAGAG CAAGACCACC
  CAAGGGATTT CCCAGGCCCT AACTATGAAA GAGCCAACTA CATGTGCTAG AAGGCACTCC
  CACCCAGACC TCCCAGCCTC AGGACAGGGA AGGAAAAGAG CCCTGAAAAG CTTGCCTGAT
  GCTCCAGGTC CCACTTGTGG CTTCTATCAG CTCAGTCACT CCCGAGACCA GCCTCACTCC
  M
  GTTTCTGGGC TCTGGTCTTC AGGTTCTCTA GCTTTGGCTA GGTTCTGAAG CGTTAGCCTC
  AGAGCAGGCA GGGGCTCTGG TTCAAGCTGA GGGCGGGGGG CAGGCGGAGC AACACTAGAC
  ACTGTTAAAG CTAACACTCC CTCTGAGCTC CAAGCCAAGC AACAGAAGCC CGGAGGGCCC
  TTTAAGAGGA GGGGCTACAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss47677069	NES10272716	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	C	A	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs32523512					SNP	A	A	A	A	A	A	A	C	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47677069	NES10272716	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:32903592 () rs orientation: forward

Symbol	Name	Function Class
Gm71279	predicted gene, 71279	236 bp upstream
Pisd	phosphatidylserine decarboxylase	within coordinates
Rr609420	regulatory region 609420	within coordinates
Rr609421	regulatory region 609421	54 bp proximal
Rr609422	regulatory region 609422	247 bp proximal
Rr609423	regulatory region 609423	1345 bp proximal
Rr609424	regulatory region 609424	1583 bp proximal
Rr609425	regulatory region 609425	1847 bp proximal
Tssr45794	transcription start site region 45794	124 bp downstream
Tssr45795	transcription start site region 45795	273 bp upstream
Tssr50589	transcription start site region 50589	24 bp downstream
Tssr50590	transcription start site region 50590	69 bp downstream
Tssr50591	transcription start site region 50591	95 bp downstream