rs32523513 SNP Detail

Summary

• ID
  rs32523513
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:32903453 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGCGGGGGG GGGGGGCGGG GGGGGTTCCC TGGGGGGGGC
  GCAGGAGAGC AAGACCACCC AAGGGATTTC CCAGGCCCTA ACTATGAAAG AGCCAACTAC
  W
  TGTGCTAGAA GGCACTCCCA CCCAGACCTC CCAGCCTCAG GACAGGGAAG GAAAAGAGCC
  CTGAAAAGCT TGCCTGATGC TCCAGGTCCC ACTTGTGGCT                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	MOLF/EiJ	NZW/LacJ
ss47677071	NES10272715	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	MOLF/EiJ	NZW/LacJ
rs32523513					SNP	A	A	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47677071	NES10272715	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:32903453 () rs orientation: forward

Symbol	Name	Function Class
Gm71279	predicted gene, 71279	375 bp upstream
Pisd	phosphatidylserine decarboxylase	within coordinates
Rr609420	regulatory region 609420	within coordinates
Rr609421	regulatory region 609421	193 bp proximal
Rr609422	regulatory region 609422	386 bp proximal
Rr609423	regulatory region 609423	1484 bp proximal
Rr609424	regulatory region 609424	1722 bp proximal
Rr609425	regulatory region 609425	1986 bp proximal
Tssr45794	transcription start site region 45794	10 bp upstream
Tssr45795	transcription start site region 45795	412 bp upstream
Tssr50589	transcription start site region 50589	163 bp downstream
Tssr50590	transcription start site region 50590	208 bp downstream
Tssr50591	transcription start site region 50591	234 bp downstream