rs32524459 SNP Detail

Summary

• ID
  rs32524459
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:32901930 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAAAAGCGG ACCCCACACA
  GCACGCTGGG AACAGGCTGA GAGAGTCCTG TCTGTCCGGC CTAGAGCTGC CAAGGACAGG
  GACAGTCCTC AGCAGTCTCC CGTGTCACCT CCAAAGCTGA GCTACTTCAA CAATAATGCT
  CCCATCTTCC CCAGGCCACC AGACCCTCCC CCTGAAGAAG CCCTAGGACT CTCCCTAGCC
  Y
  GTGAGTGAAT CCTGGACAAG AAGGAGCCCC GAGGCAGGCC AGTGCTGACA CCACAGTCCC
  TTCTGAGAGT CAAGTGCATC CTGGGGAGGC TAGTAAAGAC TTGGGTCGCG GCCTGAGCAC
  CGTCACTTGG CCCGTGGGAA CCCAGAGGGA TCTCTGGTGA GCATACATCT GACACTGCAG
  TCCTGAGTGC TACTCAAGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss47677077	NES10272712	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs32524459					SNP	C	C	C	C	C	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47677077	NES10272712	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:32901930 () rs orientation: forward

Symbol	Name	Function Class
Gm71279	predicted gene, 71279	1898 bp upstream
Pisd	phosphatidylserine decarboxylase	within coordinates
Rr609419	regulatory region 609419	1887 bp distal
Rr609420	regulatory region 609420	1179 bp proximal
Rr609421	regulatory region 609421	1716 bp proximal
Rr609422	regulatory region 609422	1909 bp proximal
Tssr45794	transcription start site region 45794	1533 bp upstream
Tssr45795	transcription start site region 45795	1935 bp upstream
Tssr50589	transcription start site region 50589	1686 bp downstream
Tssr50590	transcription start site region 50590	1731 bp downstream
Tssr50591	transcription start site region 50591	1757 bp downstream