rs32524461 SNP Detail

Summary

• ID
  rs32524461
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:32901787 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGGCACTA AGACCTGTCC
  AAGGGATCAA AGGACCCAGC CTGCACTTGC CCACAGAGAG GGCATGGATG AGCAGTGTAT
  TCTTGCCTTT ATCGAAGTCT TCTTTCCTAC ACTGAACACC TGTGTGTCAA CTTCCTTAAA
  ACATCAAAAG CGGACCCCAC ACAGCACGCT GGGAACAGGC TGAGAGAGTC CTGTCTGTCC
  R
  GCCTAGAGCT GCCAAGGACA GGGACAGTCC TCAGCAGTCT CCCGTGTCAC CTCCAAAGCT
  GAGCTACTTC AACAATAATG CTCCCATCTT CCCCAGGCCA CCAGACCCTC CCCCTGAAGA
  AGCCCTAGGA CTCTCCCTAG CCCGTGAGTG AATCCTGGAC AAGAAGGAGC CCCGAGGCAG
  GCCAGTGCTG ACACCACAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	MOLF/EiJ	PWD/PhJ
ss47677079	NES10272711	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	MOLF/EiJ	PWD/PhJ
rs32524461					SNP	G	G	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47677079	NES10272711	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:32901787 () rs orientation: forward

Symbol	Name	Function Class
Pisd	phosphatidylserine decarboxylase	within coordinates
Rr609417	regulatory region 609417	1979 bp distal
Rr609419	regulatory region 609419	1744 bp distal
Rr609420	regulatory region 609420	1322 bp proximal
Rr609421	regulatory region 609421	1859 bp proximal
Tssr45794	transcription start site region 45794	1676 bp upstream
Tssr50589	transcription start site region 50589	1829 bp downstream
Tssr50590	transcription start site region 50590	1874 bp downstream
Tssr50591	transcription start site region 50591	1900 bp downstream