rs32529246 SNP Detail

Summary

• ID
  rs32529246
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:31239573 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGCGT CTGGCATCTT AAAAAGTCCA
  Y
  TCTCTAGAGG AGACCAGCTG GTAAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
ss48176013	NES12108794	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	C	C	T		C	T	C
ss325134035	CHEV_16_31420841	CHEVERUD	SCREENING_POP	f	SNP							T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
rs32529246					SNP	T	T	C	C	C	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48176013	NES12108794	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:31239573 () rs orientation: forward

Symbol	Name	Function Class
Bdh1	3-hydroxybutyrate dehydrogenase, type 1	1542 bp upstream
Rr514473	regulatory region 514473	940 bp distal
Rr514474	regulatory region 514474	1315 bp proximal
Rr514475	regulatory region 514475	1536 bp proximal
Tssr137893	transcription start site region 137893	1513 bp upstream
Tssr137894	transcription start site region 137894	1533 bp upstream
Tssr137895	transcription start site region 137895	1560 bp upstream
Tssr140755	transcription start site region 140755	613 bp downstream