rs32529249 SNP Detail

Summary

• ID
  rs32529249
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:31241317 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTATTACAC CCTGCGGGGA GTAAGAGGGC TCGGGGCATC
  TGGCTGGTCA CTGTCTGGAG GGGGCTTGGC GTGCTGGTGG GTGCTGCAGA AGAGGCCTCA
  K
  TGCACTGGCT AAGGTAAGAA AAAGAAGGCT GGAGCTGGGC AGTGGTGGCA CACGCCTTTA
  ATCCCAGCAC TTGGGAGGCA GAGGCAGGTG GATTTCTGAG                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48176017	NES12108757	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32529249					SNP	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48176017	NES12108757	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:31241317 () rs orientation: forward

Symbol	Name	Function Class
Bdh1	3-hydroxybutyrate dehydrogenase, type 1	within coordinates
Rr514474	regulatory region 514474	209 bp distal
Rr514475	regulatory region 514475	99 bp distal
Rr514476	regulatory region 514476	1928 bp proximal
Tssr137893	transcription start site region 137893	221 bp downstream
Tssr137894	transcription start site region 137894	191 bp downstream
Tssr137895	transcription start site region 137895	152 bp downstream
Tssr140755	transcription start site region 140755	1121 bp upstream