rs32529253 SNP Detail

Summary

• ID
  rs32529253
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:31241954 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCACTTGGG AGGCAGAGGC
  AAGAGTATCT CTGTGAGTTC AAGGCCAACC TGGTCTACAG AGCAGGATCC AGATCAGCTA
  GGGTTACACA GAGAAAACCT GTCTCTAAAA CCAAAAAGAA AACAAACAGA CAAACAAACA
  AACAGCCCAA AAGAAAAAAC AAAATCCAAA CAGAAAGACT AAGTAGCGCT GCAACTGGAA
  R
  AGCCAGATTT TAACTCTGGT ACCATCAGAC AGAAATGAAA GACACTTATT TAGAAAAAAA
  AAAAAGTAAA ATAAACATGT AACTTTATCT TATTTTTAAA ACTTAAAAAA AAATTAGACT
  TAGAAGTATA GAAAATAAAA TCTGATTTAA GCCTTGAGAA TTGTGTTCCA TGTACATTTA
  AGGTTTCTAT GGCCCAGGCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48176021	NES12108682	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32529253					SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48176021	NES12108682	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:31241954 () rs orientation: forward

Symbol	Name	Function Class
Bdh1	3-hydroxybutyrate dehydrogenase, type 1	within coordinates
Rr514474	regulatory region 514474	846 bp distal
Rr514475	regulatory region 514475	736 bp distal
Rr514476	regulatory region 514476	1291 bp proximal
Tssr137893	transcription start site region 137893	858 bp downstream
Tssr137894	transcription start site region 137894	828 bp downstream
Tssr137895	transcription start site region 137895	789 bp downstream
Tssr140755	transcription start site region 140755	1758 bp upstream