rs32529401 SNP Detail

Summary

• ID
  rs32529401
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:24097482 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACATCCTAG AGGGCACACA TCCCGCTTAT AACTCAGTGA
  ATCTGGTGGC ATTGAGCACT CTTCATAAAC AGCCCTCCAA CCAATCACTG CCCTGATGGT
  Y
  ACCTTGAATA TGAAAAACTC GTGCTTTCTG TCTCCAGGCT TCAACAATAA AAAAATTCTT
  CACGGGCTGG AGAGAAGGCT CAGCGGTTAA GAGCACTGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	C57BL/6J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
ss46156459	mCV25416655	ABI	CRAMUS_MOUSE	f	SNP		C		T
ss60983367	NES16154600	PERLEGEN	MM_PANEL2	f	SNP	C		T		T	T		C	C
ss148598565	ENSMUSSNP4072545	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
ss322120422	CHEV_7_25183076	CHEVERUD	SCREENING_POP	f	SNP							C			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	C57BL/6J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
rs32529401					SNP	C	C	T	T	T	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60983367	NES16154600	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:24097482 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18537	CpG island 18537	1129 bp proximal
Gm74022	predicted gene, 74022	954 bp downstream
Rr643435	regulatory region 643435	674 bp distal
Rr643436	regulatory region 643436	171 bp proximal
Rr643437	regulatory region 643437	1072 bp proximal
Rr643438	regulatory region 643438	1573 bp proximal
Rr643439	regulatory region 643439	1868 bp proximal
Smg9	SMG9 nonsense mediated mRNA decay factor	1624 bp upstream
Tssr64959	transcription start site region 64959	1549 bp upstream
Tssr64960	transcription start site region 64960	1617 bp upstream
Tssr64961	transcription start site region 64961	1756 bp upstream
Tssr64962	transcription start site region 64962	1902 bp upstream
Tssr64963	transcription start site region 64963	1920 bp upstream
Tssr64964	transcription start site region 64964	1956 bp upstream
Tssr71075	transcription start site region 71075	1801 bp downstream