rs32533916 SNP Detail

Summary

• ID
  rs32533916
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:175458190 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ATATGAGCT AACCAGAGCA AAGTCTGTTA
  ACAAGAAATG TTGAACCACC AGGGGCAAAG GCAAGAGATA AGAATCTTCC AAGGACGTTC
  CATCCCACGT AGCAGAAATA CATCAAGGTT TCAGAACAGT GGGAACACTG GGAAAATAGA
  R
  ATATGACCAC GAAGCTGGAG CTACAGGACA AAATCCAGAT GGATCTTAAG AAGCACAAAG
  CTGAGGAAGA AGTCATTTAT GAGACAAAAC ATGGCTTGAA GAAATAGCCC ATGGTAACTA
  GAATGCTCGC TTAGCATGTG TGAGGCCTGA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46694121	NES10679201	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A		A	G	A		A
ss320151875	CHEV_1_177560755	CHEVERUD	SCREENING_POP	f	SNP							A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32533916					SNP	A	A	A	A	A	A	A	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46694121	NES10679201	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:175458190 () rs orientation: forward

Symbol	Name	Function Class
Kmo	kynurenine 3-monooxygenase	1569 bp upstream
Rr396618	regulatory region 396618	1194 bp upstream
Tssr10313	transcription start site region 10313	1344 bp upstream
Tssr10314	transcription start site region 10314	1372 bp upstream
Tssr10315	transcription start site region 10315	1391 bp upstream
Tssr10316	transcription start site region 10316	1420 bp upstream
Tssr10317	transcription start site region 10317	1440 bp upstream
Tssr10318	transcription start site region 10318	1472 bp upstream
Tssr10319	transcription start site region 10319	1480 bp upstream
Tssr10320	transcription start site region 10320	1496 bp upstream
Tssr10321	transcription start site region 10321	1517 bp upstream
Tssr10322	transcription start site region 10322	1531 bp upstream
Tssr10323	transcription start site region 10323	1545 bp upstream