rs32533917 SNP Detail

Summary

• ID
  rs32533917
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:175458576 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CATTTATTC TTAAGTACTT TACTTGCATG
  TGCAATACTC CTTCATTTTT AAAAAGCTTC TAAAAAGACA CGTTTTTCTC TATATTGATA
  CTGAAGTAAA TTGAAAGAAA AATTAGGGTG GAAAGGGGTG TGAAATCTGC TAACATTTAT
  W
  TTGAAAAGGA CGGGAATGAA GAGGAAGAGA GAAAATGAGG CCAAGAGGGA aagcaaggaa
  ggtagaaaga agggaaggga agggatggag aaaggaagac aggaaggagg gagagaaAGC
  TTCAGGGACC TTGGAGAGGA ACCAGGAATT                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
ss46694122	NES10679202	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A		T		A
ss320151876	CHEV_1_177561141	CHEVERUD	SCREENING_POP	f	SNP									A		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
rs32533917					SNP	A	A	A	A	A	A	A	A	A	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46694122	NES10679202	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:175458576 () rs orientation: forward

Symbol	Name	Function Class
Kmo	kynurenine 3-monooxygenase	1183 bp upstream
Rr396618	regulatory region 396618	808 bp upstream
Rr423839	regulatory region 423839	496 bp proximal
Tssr10313	transcription start site region 10313	958 bp upstream
Tssr10314	transcription start site region 10314	986 bp upstream
Tssr10315	transcription start site region 10315	1005 bp upstream
Tssr10316	transcription start site region 10316	1034 bp upstream
Tssr10317	transcription start site region 10317	1054 bp upstream
Tssr10318	transcription start site region 10318	1086 bp upstream
Tssr10319	transcription start site region 10319	1094 bp upstream
Tssr10320	transcription start site region 10320	1110 bp upstream
Tssr10321	transcription start site region 10321	1131 bp upstream
Tssr10322	transcription start site region 10322	1145 bp upstream
Tssr10323	transcription start site region 10323	1159 bp upstream