rs32533918 SNP Detail

Summary

• ID
  rs32533918
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:175459035 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTTCATTC TGTGTGATAT
  ATAGCATACT ATAATGACTC AGCCTTTTTC TAGCACGTCT AACATACTCT CCTACAGGGG
  CACTATCGGG TGGTGTTTCC TTCCAGTCCC TACCCAAAGA AATGCCATTT GTGTTCTCAT
  CAGAAATTGG AAAAACCAAT AAATCTTCAT TGATGCTCTT ATTTTATTTT AATCACAATA
  Y
  GATCTAGAAA AGAAGCACAA CTCACGAATA GGCCCCCAAA CCAAGCACTA TACGTTTCAA
  ATGAAGTAGA GATGTCAAAG TGATGAGACA CCCTCAAACC ACACATTTGA GTAGAGATGC
  AGGGTGTTCA CCATCTTGCC CATGGCAAAG CATGAGCTAG ATTCTAAAGT CCTAGGCAAG
  AAAAAAACAA ACAAAGCAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
ss46694124	NES10679155	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	C	C	C		T		C
ss320151881	CHEV_1_177561600	CHEVERUD	SCREENING_POP	f	SNP							T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
rs32533918					SNP	T	C	T	C	C	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46694124	NES10679155	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:175459035 () rs orientation: forward

Symbol	Name	Function Class
Kmo	kynurenine 3-monooxygenase	724 bp upstream
Rr396618	regulatory region 396618	349 bp upstream
Tssr10313	transcription start site region 10313	499 bp upstream
Tssr10314	transcription start site region 10314	527 bp upstream
Tssr10315	transcription start site region 10315	546 bp upstream
Tssr10316	transcription start site region 10316	575 bp upstream
Tssr10317	transcription start site region 10317	595 bp upstream
Tssr10318	transcription start site region 10318	627 bp upstream
Tssr10319	transcription start site region 10319	635 bp upstream
Tssr10320	transcription start site region 10320	651 bp upstream
Tssr10321	transcription start site region 10321	672 bp upstream
Tssr10322	transcription start site region 10322	686 bp upstream
Tssr10323	transcription start site region 10323	700 bp upstream