rs32533919 SNP Detail

Summary

• ID
  rs32533919
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:175459112 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCACTATC GGGTGGTGTT
  TCCTTCCAGT CCCTACCCAA AGAAATGCCA TTTGTGTTCT CATCAGAAAT TGGAAAAACC
  AATAAATCTT CATTGATGCT CTTATTTTAT TTTAATCACA ATACGATCTA GAAAAGAAGC
  ACAACTCACG AATAGGCCCC CAAACCAAGC ACTATACGTT TCAAATGAAG TAGAGATGTC
  R
  AAGTGATGAG ACACCCTCAA ACCACACATT TGAGTAGAGA TGCAGGGTGT TCACCATCTT
  GCCCATGGCA AAGCATGAGC TAGATTCTAA AGTCCTAGGC AAGAAAAAAA CAAACAAAGC
  AAAACTCTGG TCAGTCTAGT TACACCTCTA GAAATCCTAC TCAGGAGATT ATTATGACAG
  CAGAGAATGT TTCCCAGCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
ss46694125	NES10679156	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	A	A	A		A		A
ss320151886	CHEV_1_177561677	CHEVERUD	SCREENING_POP	f	SNP							G		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
rs32533919					SNP	G	A	G	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46694125	NES10679156	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:175459112 () rs orientation: forward

Symbol	Name	Function Class
Kmo	kynurenine 3-monooxygenase	647 bp upstream
Rr396618	regulatory region 396618	272 bp upstream
Tssr10313	transcription start site region 10313	422 bp upstream
Tssr10314	transcription start site region 10314	450 bp upstream
Tssr10315	transcription start site region 10315	469 bp upstream
Tssr10316	transcription start site region 10316	498 bp upstream
Tssr10317	transcription start site region 10317	518 bp upstream
Tssr10318	transcription start site region 10318	550 bp upstream
Tssr10319	transcription start site region 10319	558 bp upstream
Tssr10320	transcription start site region 10320	574 bp upstream
Tssr10321	transcription start site region 10321	595 bp upstream
Tssr10322	transcription start site region 10322	609 bp upstream
Tssr10323	transcription start site region 10323	623 bp upstream