rs32533920 SNP Detail

Summary

• ID
  rs32533920
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:175459141 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGATG AGACACCCTC AAACCACACA
  Y
  TTGAGTAGAG ATGCAGGGTG TTCAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
ss46694126	NES10679157	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	T	T	T		C		T
ss320151887	CHEV_1_177561706	CHEVERUD	SCREENING_POP	f	SNP							C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
rs32533920					SNP	C	T	C	T	T	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46694126	NES10679157	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:175459141 () rs orientation: forward

Symbol	Name	Function Class
Kmo	kynurenine 3-monooxygenase	618 bp upstream
Rr396618	regulatory region 396618	243 bp upstream
Tssr10313	transcription start site region 10313	393 bp upstream
Tssr10314	transcription start site region 10314	421 bp upstream
Tssr10315	transcription start site region 10315	440 bp upstream
Tssr10316	transcription start site region 10316	469 bp upstream
Tssr10317	transcription start site region 10317	489 bp upstream
Tssr10318	transcription start site region 10318	521 bp upstream
Tssr10319	transcription start site region 10319	529 bp upstream
Tssr10320	transcription start site region 10320	545 bp upstream
Tssr10321	transcription start site region 10321	566 bp upstream
Tssr10322	transcription start site region 10322	580 bp upstream
Tssr10323	transcription start site region 10323	594 bp upstream