rs32533922 SNP Detail

Summary

• ID
  rs32533922
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:175459287 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGTTTCAAA TGAAGTAGAG
  ATGTCAAAGT GATGAGACAC CCTCAAACCA CACATTTGAG TAGAGATGCA GGGTGTTCAC
  CATCTTGCCC ATGGCAAAGC ATGAGCTAGA TTCTAAAGTC CTAGGCAAGA AAAAAACAAA
  CAAAGCAAAA CTCTGGTCAG TCTAGTTACA CCTCTAGAAA TCCTACTCAG GAGATTATTA
  W
  GACAGCAGAG AATGTTTCCC AGCAGAGACA GTTAAGGCAA CAAGCCCACA AAGTCCTTTC
  AGGTCAAATT CGTGGTTGTT CTCAGTAACA GCAGGAATTA GCTATGAATT CAGGTCATCT
  CCCTCTGAGA AAGGGAAGAC GCTTCAGAAC CCCAGATAAC ACAAGTTTCA TTCAAAGCCA
  CATTTCGAAT GAAAACGAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
ss46694128	NES10679159	PERLEGEN	MM_PANEL2	f	SNP	A	T	A	T	T	T	T		A		T
ss320151890	CHEV_1_177561852	CHEVERUD	SCREENING_POP	f	SNP								A		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
rs32533922					SNP	A	T	A	T	T	T	T	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46694128	NES10679159	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:175459287 () rs orientation: forward

Symbol	Name	Function Class
Kmo	kynurenine 3-monooxygenase	472 bp upstream
Rr396618	regulatory region 396618	97 bp upstream
Tssr10313	transcription start site region 10313	247 bp upstream
Tssr10314	transcription start site region 10314	275 bp upstream
Tssr10315	transcription start site region 10315	294 bp upstream
Tssr10316	transcription start site region 10316	323 bp upstream
Tssr10317	transcription start site region 10317	343 bp upstream
Tssr10318	transcription start site region 10318	375 bp upstream
Tssr10319	transcription start site region 10319	383 bp upstream
Tssr10320	transcription start site region 10320	399 bp upstream
Tssr10321	transcription start site region 10321	420 bp upstream
Tssr10322	transcription start site region 10322	434 bp upstream
Tssr10323	transcription start site region 10323	448 bp upstream