rs32533923 SNP Detail

Summary

• ID
  rs32533923
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:175459397 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTAAAGTC CTAGGCAAGA
  AAAAAACAAA CAAAGCAAAA CTCTGGTCAG TCTAGTTACA CCTCTAGAAA TCCTACTCAG
  GAGATTATTA TGACAGCAGA GAATGTTTCC CAGCAGAGAC AGTTAAGGCA ACAAGCCCAC
  AAAGTCCTTT CAGGTCAAAT TCGTGGTTGT TCTCAGTAAC AGCAGGAATT AGCTATGAAT
  Y
  CAGGTCATCT CCCTCTGAGA AAGGGAAGAC GCTTCAGAAC CCCAGATAAC ACAAGTTTCA
  TTCAAAGCCA CATTTCGAAT GAAAACGAAA CTGACACACA CCACAGAAGG AGAAGAAGAA
  AAGCCCCGAG GATGCTATTT AAACAGAAAA GGTGTCTCAT ATGAGACTGG GTTTTTGAAA
  TTTTGGTTAT CGCGGTGAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
ss46694129	NES10679160	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	T	T	T		C		T
ss146323470	ENSMUSSNP5182767	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T		T
ss320151891	CHEV_1_177561962	CHEVERUD	SCREENING_POP	f	SNP								T		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
rs32533923					SNP	C	C	T	C	T	T	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46694129	NES10679160	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:175459397 () rs orientation: forward

Symbol	Name	Function Class
Kmo	kynurenine 3-monooxygenase	362 bp upstream
Rr396618	regulatory region 396618	within coordinates
Rr423839	regulatory region 423839	within coordinates
Tssr10313	transcription start site region 10313	137 bp upstream
Tssr10314	transcription start site region 10314	165 bp upstream
Tssr10315	transcription start site region 10315	184 bp upstream
Tssr10316	transcription start site region 10316	213 bp upstream
Tssr10317	transcription start site region 10317	233 bp upstream
Tssr10318	transcription start site region 10318	265 bp upstream
Tssr10319	transcription start site region 10319	273 bp upstream
Tssr10320	transcription start site region 10320	289 bp upstream
Tssr10321	transcription start site region 10321	310 bp upstream
Tssr10322	transcription start site region 10322	324 bp upstream
Tssr10323	transcription start site region 10323	338 bp upstream