rs32537054 SNP Detail

Summary

• ID
  rs32537054
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:180770053 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCAC TTTGTAACTT TTAAGTGGTG
  S
  GGACGCCACC CCGCCTCGCC AGGTA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45159638	mCV25327849	ABI	CRAMUS_MOUSE	f	SNP	C	G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs32537054					SNP	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:180770053 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi1127	CpG island 1127			within coordinates
Cpgi1128	CpG island 1128			893 bp proximal
Rr424644	regulatory region 424644			1437 bp distal
Rr424645	regulatory region 424645			1084 bp distal
Rr424646	regulatory region 424646			19 bp distal
Rr424647	regulatory region 424647			within coordinates
Rr424648	regulatory region 424648			1391 bp proximal
Rr424649	regulatory region 424649			1524 bp proximal
Rr424650	regulatory region 424650			1558 bp proximal
Tmem63a	transmembrane protein 63a			mRNA-UTR
				Noncoding-Transcript-Variant
Tssr324	transcription start site region 324			1569 bp upstream
Tssr10503	transcription start site region 10503			136 bp downstream
Tssr10504	transcription start site region 10504			120 bp downstream
Tssr10505	transcription start site region 10505			43 bp downstream
Tssr10506	transcription start site region 10506			11 bp downstream
Tssr10507	transcription start site region 10507			12 bp upstream