rs32537275 SNP Detail

Summary

• ID
  rs32537275
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:35205326 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTGGTTCT AGGAGATGTA
  AGAAAAGCAT GCCAGGCACG AGGAGGCATT TCATACGGTG GCCTAGCACG CAGGGACTGC
  CCACTCATTC CTCACAGAGT AGGACCAGAG CTGTGGGTGG TAGAGGTGAG AAAGCTTTCC
  CAAACGTTTG GAAATAGGAC ACATTCCTGA CTGATTGGGG TCAGGAAGAG AGGCCACACT
  K
  CTCAGAAAAA CCTGTCATCT GCCCCTAGGC AGTCAGCCTT GAAAATCCTG TGAGCACCAG
  AGACTCTTGC TCACTTATTA CTTCAGGATC TTTACAGGGT TGGAAGCCTA GGTGATCCTG
  AGTCAGGACT CTGGCTGCTG GTGCACAGAC AGCTGAGCCT AGTCTCTGTT CCAGGGGGAC
  TCAGGTGGGC CCTTGGTCTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47678767	NES10266376	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32537275					SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47678767	NES10266376	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:35205326 () rs orientation: forward

Symbol	Name	Function Class
Hgfac	hepatocyte growth factor activator	within coordinates
Rr609837	regulatory region 609837	1204 bp proximal
Tssr45930	transcription start site region 45930	1489 bp downstream