rs32537277 SNP Detail

Summary

• ID
  rs32537277
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:35205179 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCATGGAGG GGCTGTTTTA
  TGCCCTTTAA ACAGGCAAAG AAACCGAGTC TTAGAGAGGT TGGATCCCTT TTCTGAAGTG
  ATACAGGGTC AAGTGGACGG AACTTGATGC TGGGACAATG AGGGCTTCCC AGGAAAGAGG
  ACAGTAGCAC TGGTTCTAGG AGATGTAAGA AAAGCATGCC AGGCACGAGG AGGCATTTCA
  K
  ACGGTGGCCT AGCACGCAGG GACTGCCCAC TCATTCCTCA CAGAGTAGGA CCAGAGCTGT
  GGGTGGTAGA GGTGAGAAAG CTTTCCCAAA CGTTTGGAAA TAGGACACAT TCCTGACTGA
  TTGGGGTCAG GAAGAGAGGC CACACTTCTC AGAAAAACCT GTCATCTGCC CCTAGGCAGT
  CAGCCTTGAA AATCCTGTGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47678769	NES10266375	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32537277					SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47678769	NES10266375	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:35205179 () rs orientation: forward

Symbol	Name	Function Class
Hgfac	hepatocyte growth factor activator	within coordinates
Rr609837	regulatory region 609837	1351 bp proximal
Tssr45930	transcription start site region 45930	1342 bp downstream