rs32538108 SNP Detail

Summary

• ID
  rs32538108
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141264025 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCTCCCTC GGCTTGCACA
  GGGGGTCAAA CTCCAGGTCT GAGGCAAGCC GTGCCTCTGA AATCTGCATG ATGTAAAATG
  TCAAGTCTGA CCACCCAACA CAGGAGCAGA GCGAATGAGG CGATGCACGT GTTTGCACGT
  CGGGTGCGTA TCAATTTCCC ATGCAGAGAC CCATGGAAGA GCCACTGGGC GATTTAAAGG
  R
  GGTACAGCGC AGAGGGGTTT CCACTCCAGA ACCTAAGAAA GCGGAGTGCT ATCTTCTCCA
  CGCTGAGGAC CTGCTACTAG AGGGCAGAGA CCCGAGCCGA GGGGTGGAGC AGCACGGGCA
  GAGAAAGTTC CCATCTGCTG GCGCTCCAGC TGCTGCAGTC CCCTTTCATC CCCGGGCACC
  CCGGCCAACA CTCCATCTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss45660348	mCV22794026	ABI	CRAMUS_MOUSE	f	SNP	A	G
ss147740575	ENSMUSSNP4114136	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss321387941	CHEV_4_141092629	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs32538108					SNP	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141264025 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15233	CpG island 15233	within coordinates
Cpgi15234	CpG island 15234	705 bp proximal
Gm4123	predicted gene 4123	within coordinates
Rr1207	regulatory region 1207	47 bp proximal
Rr603787	regulatory region 603787	1299 bp distal
Rr603788	regulatory region 603788	70 bp proximal
Rr603789	regulatory region 603789	1725 bp proximal
Spen	spen family transcription repressor	within coordinates
Tssr44321	transcription start site region 44321	1720 bp downstream
Tssr44322	transcription start site region 44322	1848 bp downstream