rs32538363 SNP Detail

Summary

• ID
  rs32538363
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:35203395 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTCC ACTCTGTCTC CACCTAACAC
  R
  GCTGTAGCCT GAGACACCGA GACTA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45752800	mCV24465195	ABI	CRAMUS_MOUSE	f	SNP		G	A					G	G
ss47678789	NES10266598	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	A	A		G	G	G	G	G	G	A
ss148221017	ENSMUSSNP1074799	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32538363					SNP	G	G	A	A	A	A	A	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47678789	NES10266598	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:35203395 () rs orientation: forward

Symbol	Name	Function Class
Hgfac	hepatocyte growth factor activator	within coordinates
Tssr45928	transcription start site region 45928	780 bp downstream
Tssr45929	transcription start site region 45929	766 bp downstream
Tssr45930	transcription start site region 45930	432 bp upstream