rs32538664 SNP Detail

Summary

• ID
  rs32538664
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:133090969 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTGG AGGAAGTGTC ACTATAGGGT
  R
  AGCGGCACCT AATGGGGAAT CAGGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45159457	mCV24901136	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	A	A
ss145490349	ENSMUSSNP3652298	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A		A
ss319979075	CHEV_1_135059808	CHEVERUD	SCREENING_POP	f	SNP						G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32538664					SNP	G	G	A	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:133090969 () rs orientation: forward

Symbol	Name	Function Class
Cpgi742	CpG island 742	423 bp proximal
Plekha6	pleckstrin homology domain containing, family A member 6	979 bp upstream
Rr19297	regulatory region 19297	1769 bp distal
Rr28535	regulatory region 28535	31 bp proximal
Tssr211	transcription start site region 211	703 bp upstream
Tssr8784	transcription start site region 8784	620 bp upstream
Tssr8785	transcription start site region 8785	743 bp upstream