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rs32539316 SNP Detail
Summary
  • ID
    rs32539316
  • Variation Type
    SNP
  • Alleles
    A/T
Genome Location and Flanking Sequence
  • Location
    Chr1:180076144 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          CTTGT AGGGATGAAG GGGTAAACTG
    W
    ACAGCCCTTA ATCCTGGACA CCGGA                                      
    
    W = A/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129X1/SvJ
A/J
C57BL/6J
DBA/2J
ss45159358 mCV24586033 ABI CRAMUS_MOUSE f SNP T A T
ss146378782 ENSMUSSNP443521 ENSEMBL ENSEMBL_Sanger f SNP T A T
SNP Consensus Information
SNP Consensus Type
129X1/SvJ
A/J
C57BL/6J
DBA/2J
rs32539316 SNP T A T T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr1:180076144 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi1103 CpG island 1103 1563 bp proximal
Psen2 presenilin 2 Intron
Noncoding-Transcript-Variant
Rr372537 regulatory region 372537 1289 bp upstream
Rr424423 regulatory region 424423 440 bp distal
Rr424424 regulatory region 424424 171 bp distal
Rr424425 regulatory region 424425 296 bp proximal
Rr424426 regulatory region 424426 1175 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory