rs32539467 SNP Detail

Summary

• ID
  rs32539467
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135352219 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGCT GCCACATCTG TCCACAGAAA
  Y
  GAATATGCCT CATTCCCAGG AGGCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45660362	mCV22567734	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	C
ss147548732	ENSMUSSNP1439225	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32539467					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135352219 () rs orientation: forward

Symbol	Name	Function Class
1700029M20Rik	RIKEN cDNA 1700029M20 gene	1747 bp upstream
Cpgi15077	CpG island 15077	1872 bp proximal
Gm69371	predicted gene, 69371	within coordinates
Gm69375	predicted gene, 69375	within coordinates
Rr602082	regulatory region 602082	734 bp distal
Tssr39623	transcription start site region 39623	1782 bp upstream
Tssr39624	transcription start site region 39624	1794 bp upstream
Tssr39625	transcription start site region 39625	1823 bp upstream
Tssr39626	transcription start site region 39626	1854 bp upstream
Tssr39627	transcription start site region 39627	1904 bp upstream