rs32539541 SNP Detail

Summary

• ID
  rs32539541
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:78633956 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATACA AAGAAGCCTA GTGAACAGAA
  R
  CACAATAATT TCTGTTTAAC TAGTA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45160629	mCV22632373	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
ss144751852	ENSMUSSNP4739600	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		G
ss319804028	CHEV_1_78652814	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32539541					SNP	A	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:78633956 () rs orientation: forward

Symbol	Name	Function Class
Acsl3	acyl-CoA synthetase long-chain family member 3	1644 bp upstream
Cpgi461	CpG island 461	1255 bp proximal
Rr17618	regulatory region 17618	245 bp proximal
Rr29694	regulatory region 29694	844 bp proximal
Rr371565	regulatory region 371565	539 bp downstream
Rr396121	regulatory region 396121	1458 bp upstream
Tssr7581	transcription start site region 7581	1617 bp upstream
Tssr7582	transcription start site region 7582	1635 bp upstream
Utp14b	UTP14B small subunit processome component	1644 bp upstream