rs32540027 SNP Detail

Summary

• ID
  rs32540027
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:117695168 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATAAAAATTT TTAAAAACTG GGTGGTGGTG GCACTCAGGA
  CTTTAATCCC AGTACTTGGG AAGCAGGGGC AAGCAGATCT CCTGGGTTGA GCTAGCCCTC
  R
  AGCAGTCAAG GCTACACAAA GAAACCCTGT CTCGAAAAAG AATTAAAAGT TTAAAAAAAT
  AAAAACAACA ACAAAAAAAA AAACTTAAAG AAAAATCTG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45660451	mCV24296543	ABI	CRAMUS_MOUSE	f	SNP		G	A	G
ss147294774	ENSMUSSNP3383393	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32540027					SNP	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117695168 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14668	CpG island 14668	1216 bp distal
Gm17114	predicted gene 17114	within coordinates
Slc6a9	solute carrier family 6 (neurotransmitter transporter, glycine), member 9	within coordinates