rs32540255 SNP Detail

Summary

• ID
  rs32540255
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:35202005 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGCC TCTGCCTCTT GGGATGGTGG
  K
  TTCATGTGTG CCCACCGTGG TCTGC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss47678805	NES10266584	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	T	T	G		G	T	G	G
ss321509435	CHEV_5_35387310	CHEVERUD	SCREENING_POP	f	SNP											T					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs32540255					SNP	G	G	G	G	G	G	G	T	T	G	T	G	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47678805	NES10266584	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:35202005 () rs orientation: forward

Symbol	Name	Function Class
Hgfac	hepatocyte growth factor activator	within coordinates
Rr609835	regulatory region 609835	1504 bp distal
Rr609836	regulatory region 609836	1423 bp distal
Tssr45928	transcription start site region 45928	602 bp upstream
Tssr45929	transcription start site region 45929	614 bp upstream
Tssr45930	transcription start site region 45930	1822 bp upstream