rs32540817 SNP Detail

Summary

• ID
  rs32540817
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:161080290 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGTAT CTTCACTTTA TTTATTATGT
  R
  TTTTCACAGT AGGGAAGCAG GGTAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45160242	mCV24544653	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32540817					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:161080290 () rs orientation: forward

Symbol	Name	Function Class
Cpgi926	CpG island 926	1290 bp distal
Gm70781	predicted gene, 70781	within coordinates
Prdx6	peroxiredoxin 6	1510 bp upstream
Rr372334	regulatory region 372334	1998 bp downstream
Rr396460	regulatory region 396460	1371 bp downstream
Rr396461	regulatory region 396461	909 bp downstream
Rr421776	regulatory region 421776	1968 bp distal
Rr421777	regulatory region 421777	1566 bp distal
Rr421778	regulatory region 421778	1011 bp distal
Rr421779	regulatory region 421779	within coordinates
Rr421780	regulatory region 421780	1375 bp proximal
Rr421781	regulatory region 421781	1936 bp proximal
Tssr14577	transcription start site region 14577	1811 bp upstream
Tssr14578	transcription start site region 14578	1581 bp upstream
Tssr14579	transcription start site region 14579	1576 bp upstream
Tssr14580	transcription start site region 14580	1534 bp upstream
Tssr14581	transcription start site region 14581	1192 bp upstream