rs32542189 SNP Detail

Summary

• ID
  rs32542189
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:89740315 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGGGCAGC ATCCAGCCTC
  TACCCTTCCT ATACCCGTGT CCTTTCCAGT CAGGACAACC TCATATGGGG GCCAACGTCA
  AGTAGTTGAA AACTGTTACT GTCACCAAGG GGGAAAGCTG TGCATTAGAT ATTTCTCTCC
  AACTTGAGAG ACGGGCTTGT GCAAAGGAGT GCCTTCCTGA ACATAGTGTA AAAAAACATA
  Y
  TTTTGTCATG CGATGAAAAT TTAAGCAGCC ATTAAAATAC GGTTTTTTAA AAATTATTTT
  TATTTTATGT ATATGAGTAC ACTGTAGCTG TCTTCAGACA CACCAGAAGA GGGCATCGGA
  TTCCATCTAC AAATGGTTAT GAGCGACCAT GTGGTTGCTG GGAATTGAAC CTGGGACCTC
  TGGAAGAGCA GTCAGTGCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46157674	mCV24231565	ABI	CRAMUS_MOUSE	f	SNP		C	T				T	T
ss52487142	NES15665436	PERLEGEN	MM_PANEL2	f	SNP	C			C	C	C		T	T	T	T	T	T	T
ss145495093	ENSMUSSNP2189524	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32542189					SNP	C	C	T	C	C	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52487142	NES15665436	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:89740315 () rs orientation: forward

Symbol	Name	Function Class
Rr366841	regulatory region 366841	within coordinates
Rr667276	regulatory region 667276	121 bp distal
Rr667277	regulatory region 667277	1723 bp proximal
Tssr78677	transcription start site region 78677	1032 bp downstream
Tssr82374	transcription start site region 82374	1224 bp upstream
Tssr82375	transcription start site region 82375	1928 bp downstream
Tssr82376	transcription start site region 82376	1963 bp downstream
Tssr82377	transcription start site region 82377	1981 bp downstream