rs32542928 SNP Detail

Summary

• ID
  rs32542928
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:72324150 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGGTGGGGC AGGAGAGGGC ACACAGTTGC
  AGTTATCCAC AGAGCCTAAA TAATGAATGA TTAAACAAAA TGATTTTAGG CCACCCTCAC
  CTCATTCTCA GTGCCCCACC CAGAAATGAA AAAAAAAAGC ACCCTTCCAT AGATTTGAGA
  Y
  CTGGTCCGTT TCATCTGGGT TATATAGCAG CAGATAAAGA TGAATCGTTG CATGGTTCTT
  GTAAGATTCA TTTCTAGGTT TATGGTTTTG GAACCTGCCT TTTAGCTCCT ACCTTCAGCA
  AGGAACTTAT CAGCTCCCAG TTGGTTCCAA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
ss45160671	mCV24093626	ABI	CRAMUS_MOUSE	f	SNP		C	T			C		C
ss51274556	NES14276921	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	T		T		C	C		C	C	C
ss144651965	ENSMUSSNP4038039	ENSEMBL	ENSEMBL_Sanger	f	SNP			T					C
ss319788276	CHEV_1_72331565	CHEVERUD	SCREENING_POP	f	SNP											T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
rs32542928					SNP	C	C	T	C	T	C	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51274556	NES14276921	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:72324150 () rs orientation: forward

Symbol	Name	Function Class
Cpgi355	CpG island 355	498 bp distal
Gm51631	predicted gene, 51631	1827 bp downstream
Pecr	peroxisomal trans-2-enoyl-CoA reductase	677 bp upstream
Tmem169	transmembrane protein 169	within coordinates
Tssr114	transcription start site region 114	712 bp upstream
Tssr115	transcription start site region 115	698 bp upstream
Tssr116	transcription start site region 116	678 bp upstream
Tssr7298	transcription start site region 7298	572 bp downstream
Tssr12164	transcription start site region 12164	763 bp upstream
Tssr12165	transcription start site region 12165	725 bp upstream