rs32543126 SNP Detail

Summary

• ID
  rs32543126
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:87752174 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TATAT TTCCATGGGG AGCCCATCCC
  Y
  GTGACTGTGA CCGTGACCAA CAACA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss45161087	mCV25132789	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss144885029	ENSMUSSNP4572678	ENSEMBL	ENSEMBL_Sanger	f	SNP			T
ss319829829	CHEV_1_89721027	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs32543126					SNP	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:87752174 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr371669	regulatory region 371669			1900 bp upstream
Rr414853	regulatory region 414853			505 bp proximal
Rr414854	regulatory region 414854			600 bp proximal
Sag	S-antigen, retina and pineal gland (arrestin)			Coding-Synonymous
				Noncoding-Transcript-Variant