rs32543504 SNP Detail

Summary

• ID
  rs32543504
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:47985442 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGCC AGGGCTATGG AGATATCAAA
  R
  ACAGCCTCCC AACTCCCCCC CAAAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss46157962	mCV24781810	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G
ss144805760	ENSMUSSNP3208128	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G	G
ss322655764	CHEV_8_48617761	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs32543504					SNP	A	A	G	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:47985442 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20329	CpG island 20329	673 bp proximal
Rr186609	regulatory region 186609	within coordinates
Rr368533	regulatory region 368533	1287 bp upstream
Rr400846	regulatory region 400846	983 bp upstream
Rwdd4a	RWD domain containing 4A	1238 bp upstream
Trappc11	trafficking protein particle complex 11	within coordinates
Tssr77336	transcription start site region 77336	1232 bp upstream
Tssr81236	transcription start site region 81236	998 bp downstream
Tssr81237	transcription start site region 81237	1015 bp downstream
Tssr81238	transcription start site region 81238	1032 bp downstream