rs32543628 SNP Detail

Summary

• ID
  rs32543628
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:31802759 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTTAACTT TAGCACCACT
  GACATACCTA TTAGAAAAGT CTTCATTAAA GACATCTTTT AATCTCCCAA GGACATCTTT
  TTCACTGAGT GGGACCAGAC TTCCATACTT TTTCATAACC TCATCTAGGA ATCCTTACAT
  AAGGGGAAAA AAAAAACATG GAAAAATTTT TCATCAAAGT TGTTTTCATA ACACATATTC
  W
  CACCTATTAC AGAGAGCATA GAGCCATAAC CCGTAAAAAC GGTTACATCA TTAAGAAAAA
  AATAGGTATC CTTCACCTTT GTAACCCATG AAGAAATGCT CACAGCAGTT TTTGTTGTTT
  CAGCTCATCT TAGCCAAAGG CAATTGGCGA TGTCGGAGGA GGGTGTGCAT ACACACATGC
  ACTCGCGAGC GCGCACACAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48178853	NES12112833	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32543628					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48178853	NES12112833	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:31802759 () rs orientation: forward

Symbol	Name	Function Class
D16Mit103	DNA segment, Chr 16, Massachusetts Institute of Technology 103	162 bp proximal
Gm55238	predicted gene, 55238	1707 bp downstream
Rr514592	regulatory region 514592	619 bp proximal
Senp5	SUMO/sentrin specific peptidase 5	within coordinates