rs32543716 SNP Detail

Summary

• ID
  rs32543716
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:31758009 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGGCCCCT TTCTAAATTT
  ATACAGTTCA GGATCCCAGC CAGGAAATGG TGCTACCCAA AGTGGGCAGG CCTTCCCCAC
  TGAGTTAATG CAACCAAGAT AATCCCCAGA GGGCAAGAGA CTCGTTTTCC AGGTTAGTTA
  CAGGTTCTGG AACCAAAAGT TTGACACTCA CATTATCAAA TCCCAAGCCA CATGTCTGAG
  Y
  GCTGGTGACA GGAAGTGCAG GCATGGTTCT CAGTGGACAT TCAAGGAAGG CGAGCTGCGT
  AGATGTAGAC AAATGTCCTC CAGTTGGATG TCTTCTGTTC CTGAAGGACC CAGGTTGTTC
  TTACAATAGC GCCAAGAGCC CTGTGATATT AACTGTTACT GTGAACTTGG CATTTATTTT
  CCCCGAGATG TGACTCGGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48178751	NES12114516	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32543716					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48178751	NES12114516	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:31758009 () rs orientation: forward

Symbol	Name	Function Class
Pigz	phosphatidylinositol glycan anchor biosynthesis, class Z	within coordinates
Rr317640	regulatory region 317640	1209 bp distal
Rr326503	regulatory region 326503	1344 bp proximal
Tssr137933	transcription start site region 137933	1634 bp upstream