rs32544515 SNP Detail

Summary

• ID
  rs32544515
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:31759734 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCCTTGTC TGTCTCTGGG
  GCTTTGCTGG GAGGAGCAGT GGCTGCTTCC TGGAAGAGTT GGGGGTTTTC TTAGAAACCA
  CCCTTCCCCA CAGCTCAGCC TGATAAAGTT ACAGGAATAT GTGTAAGGGT GCCACAAGCC
  ATACAGTTGA GCAGCTGACT ATAGGAAGGG TAAGCGTGCT TGCAGAATAT GTGCAAAGGT
  R
  TAACTCTCCC AATGGCTGAT CCTTTACTAG GGAAAGGATA GTGATGTCTG CGCCTGCTCC
  TGGAGGTGGG ACTCTTCCTG GGAGTGGCAG TTTTTGGGAT CCCTCCAGCT CCTGCTGGGT
  AGAGTCCTAC CCTTCCTATC AGGTCTGTCT CACACAAACG TCTTATTTAT CTTCTTCAGT
  TTACCAACCT AACCCTTCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48178761	NES12114455	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32544515					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48178761	NES12114455	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:31759734 () rs orientation: forward

Symbol	Name	Function Class
Pigz	phosphatidylinositol glycan anchor biosynthesis, class Z	within coordinates
Rr317641	regulatory region 317641	1667 bp proximal
Rr326503	regulatory region 326503	within coordinates
Tssr137933	transcription start site region 137933	67 bp downstream
Tssr137934	transcription start site region 137934	1576 bp upstream