rs32545482 SNP Detail

Summary

• ID
  rs32545482
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:178233868 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGCGGAGG AAAGGGACGC
  GGAAGGGACA GGTAGGACCC TGCCTGGGGT GCCACGACGT CGCCTCTGCG CCTGAGGAAG
  CGCCCCCCGG CCAACATCTT GAGCCCCTCG GCGTGGCGAC AGTGGGCTGA AAAGCGGCGC
  CAGCCCGCGT CCCCACCGTC CGCCCTCCCG TCCCCTCGAG AGGTCTGCGC GGGCTGTTGT
  R
  GCCCCCGCCG GGGAGGTTCA TAATGGCGTC CTTGTCCCTG GCACCTCCCC TCCCCGTGAG
  GGCGCCAGCC GCGGTCTGGG TGGGCTGTGG GTAACCCGGA GGGCGGCCTC ATGGAGGACT
  GGAGCTGCGA CTAGAACCTG GCGGGATCCT CTGCGGCTGT GCCGAAACCC CGCCCAGCCC
  GGCCCAACCC GGCCCCAGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45160761	mCV22364013	ABI	CRAMUS_MOUSE	f	SNP	A	G	A
ss146355587	ENSMUSSNP6453564	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs32545482					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:178233868 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1092	CpG island 1092	within coordinates
Efcab2	EF-hand calcium binding domain 2	within coordinates
Gm70920	predicted gene, 70920	within coordinates
Gm70923	predicted gene, 70923	186 bp upstream
Rr29069	regulatory region 29069	within coordinates
Rr372517	regulatory region 372517	within coordinates
Tssr10392	transcription start site region 10392	283 bp downstream
Tssr10393	transcription start site region 10393	269 bp downstream
Tssr10394	transcription start site region 10394	258 bp downstream
Tssr10395	transcription start site region 10395	233 bp downstream
Tssr10396	transcription start site region 10396	198 bp downstream
Tssr10397	transcription start site region 10397	192 bp upstream
Tssr15493	transcription start site region 15493	112 bp downstream