rs32550560 SNP Detail

Summary

• ID
  rs32550560
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:31997524 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCAGTACC AAAGCCGGAG
  AGAGGGCAGG CCCTGCCCTA ACAAGAAAAA CATCCCACCA ATCCCTGAGC TTGCCCCAAA
  GATCAGGCTA CATAATCCCT CGGATTCCAG ACCACCCTGG AAAGCTTTGC CCACTAAGAA
  ACCACACATA AACTCTGTGC TCTGCCCAGT TCTCTGCTGC CTGCCAGGTT CCATTCCCGG
  R
  TGACAGAAAT TCGTGCTTAT TCAGTGCATG GAAACAAATG ATTGTTGGCT GTTCAATCAT
  CCCTCTACCT CTTCAGATGA TTCACTTCAA GGCATCAGCA TCCTCGGAAG GTCAAGTTCC
  TCTTAGAAAA TGGTGCTGTG GTGGCCAGTA TGGTAGAAGG AAAGAACTGG CGCCCACATG
  TTTTTAGATG TTTAAATTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48179553	NES12104023	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32550560					SNP	G	G	G	G	G	G	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48179553	NES12104023	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:31997524 () rs orientation: forward

Symbol	Name	Function Class
Bex6	brain expressed family member 6	1094 bp upstream
Rr370081	regulatory region 370081	1392 bp downstream
Rr370082	regulatory region 370082	1200 bp downstream
Tssr137949	transcription start site region 137949	1117 bp downstream
Tssr137950	transcription start site region 137950	1031 bp downstream
Tssr137951	transcription start site region 137951	1070 bp upstream
Tssr137952	transcription start site region 137952	1088 bp upstream
Tssr137953	transcription start site region 137953	1132 bp upstream
Tssr137954	transcription start site region 137954	1148 bp upstream
Tssr140794	transcription start site region 140794	1752 bp upstream
Tssr140795	transcription start site region 140795	873 bp downstream
Tssr140796	transcription start site region 140796	890 bp downstream
Tssr140797	transcription start site region 140797	908 bp downstream
Tssr140798	transcription start site region 140798	969 bp downstream