rs32550563 SNP Detail

Summary

• ID
  rs32550563
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:31999242 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGGA GAAGAGGACA AAGACAAGGC
  R
  TAGGTGACAA GGGGTGGATA AGAAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48179557	NES12103983	PERLEGEN	MM_PANEL2	f	SNP	A		A	G	G	A	G	G	G	G	A
ss147945921	ENSMUSSNP3040247	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32550563					SNP	A	G	A	G	G	A	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48179557	NES12103983	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:31999242 () rs orientation: forward

Symbol	Name	Function Class
Bex6	brain expressed family member 6	within coordinates
Tssr137951	transcription start site region 137951	636 bp downstream
Tssr137952	transcription start site region 137952	589 bp downstream
Tssr137953	transcription start site region 137953	574 bp downstream
Tssr137954	transcription start site region 137954	567 bp downstream
Tssr140795	transcription start site region 140795	838 bp upstream
Tssr140796	transcription start site region 140796	816 bp upstream
Tssr140797	transcription start site region 140797	787 bp upstream
Tssr140798	transcription start site region 140798	736 bp upstream