rs32551325 SNP Detail

Summary

• ID
  rs32551325
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:31999354 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGATGGGGG AGGGGACAAA
  AGAGGGTGAT AGAAAAATCT GTGACATGAA AGCAGCCAGA CTCTTGGAGA AGAGGACAAA
  GACAAGGCAT AGGTGACAAG GGGTGGATAA GAACCAAGTA CAATTACACA CACACACAAT
  GTCACAGTTA CACACACACT CAATATCACA ATCACATACA CGCAATGTCA CAATTGCATA
  Y
  ACAGCATGAC AATTACATAC AGTGTCATAA TTACACACTC AATGTCACAG TAACATACAC
  ACAATGTCGC AATTACACTC ATTCACAGTG TCACAATTAC AACACAGTGT CACAATTACA
  CACATATAGT ATCGTAATTA ATTATATAAA CAATGTCACA ATTACACAGG GTCACAATGG
  CACCCATTAC TTTGTATGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48179559	NES12103984	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32551325					SNP	T	T	T	T	T	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48179559	NES12103984	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:31999354 () rs orientation: forward

Symbol	Name	Function Class
Bex6	brain expressed family member 6	within coordinates
Tssr137951	transcription start site region 137951	748 bp downstream
Tssr137952	transcription start site region 137952	701 bp downstream
Tssr137953	transcription start site region 137953	686 bp downstream
Tssr137954	transcription start site region 137954	679 bp downstream
Tssr140795	transcription start site region 140795	950 bp upstream
Tssr140796	transcription start site region 140796	928 bp upstream
Tssr140797	transcription start site region 140797	899 bp upstream
Tssr140798	transcription start site region 140798	848 bp upstream