rs32551327 SNP Detail

Summary

• ID
  rs32551327
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:31999534 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCAATGTCA CAATTGCATA
  TACAGCATGA CAATTACATA CAGTGTCATA ATTACACACT CAATGTCACA GTAACATACA
  CACAATGTCG CAATTACACT CATTCACAGT GTCACAATTA CAACACAGTG TCACAATTAC
  ACACATATAG TATCGTAATT AATTATATAA ACAATGTCAC AATTACACAG GGTCACAATG
  R
  CACCCATTAC TTTGTATGCT ATTTTTTAAT TAAAATATTT TTAATTAAAA AAAATTTTTA
  GGGATTGTGT GTCTGTGCTT TTATTTTATT AGTGTCTCTG TATGTGGTGT GTGTGTGTGT
  GTATGTGTGT CTGTGTGTGT CTGTGTGTGT CTGTGTGTGT GTCTGTGTGT GTCTGTGTGT
  GTGTGTGTGT GTGTCTGTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48179561	NES12103985	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32551327					SNP	G	G	G	G	G	G	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48179561	NES12103985	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:31999534 () rs orientation: forward

Symbol	Name	Function Class
Bex6	brain expressed family member 6	within coordinates
Rr514654	regulatory region 514654	1993 bp proximal
Tssr137951	transcription start site region 137951	928 bp downstream
Tssr137952	transcription start site region 137952	881 bp downstream
Tssr137953	transcription start site region 137953	866 bp downstream
Tssr137954	transcription start site region 137954	859 bp downstream
Tssr140795	transcription start site region 140795	1130 bp upstream
Tssr140796	transcription start site region 140796	1108 bp upstream
Tssr140797	transcription start site region 140797	1079 bp upstream
Tssr140798	transcription start site region 140798	1028 bp upstream