rs32551493 SNP Detail

Summary

• ID
  rs32551493
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:32150839 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACATTTGTT GAAGAAAAAC
  AGAGCGAACA ATCATTTACT AAAGTCTACT ATAGACTGGT TCATTTTTTA CTAAGCTATT
  AACTTACACT TTAGAATTTA AGAAACGTCA CATAAAACCA AACAAAATAC CTACTTTATG
  TGAAACCCTG AGCGTTTCAT CAAGAGTTTG GTATTTCAGG TCTGAAGATT CTTTGGGATG
  Y
  TGGGATTCAA TGCGGTACTT AGGAGGATAT CTCCGGAATT CAGAGAAGGC ACCAAATGTT
  TCAAAGAATA GCTACCAGCC AGCAGCACAG GCTTCAAACC AAAGCGGCGG CTCGCGGAGA
  GTACGCCTGC GCAAAACGCG CACAGACAGG GAGAGGGCGG AGCTTCGGGC CTGCCAGTGC
  GCCTGCGCAC AGCACGCCGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48180058	NES12118911	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32551493					SNP	T	T	T	T	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48180058	NES12118911	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:32150839 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8188	CpG island 8188	within coordinates
Gm59802	predicted gene, 59802	within coordinates
Rr404777	regulatory region 404777	within coordinates
Rr514682	regulatory region 514682	within coordinates
Rr514683	regulatory region 514683	906 bp proximal
Tssr137967	transcription start site region 137967	217 bp upstream
Ubxn7	UBX domain protein 7	236 bp upstream