rs32553580 SNP Detail

Summary

• ID
  rs32553580
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:117010626 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTGCCTCAA CCAAAACCCC CTAAACCACC CAGTAAGGCC
  ATGTTCTAAC CTGTGACCCA CTTTTACATC ACTATCAGCT CTAAGGGCCT GTCCGTGCTC
  Y
  CCATTCAGGA TTCTTTGCAG GTAACTTCAA AATCCACGAA AATCTTAACT GCTGGGAAGA
  CTCAATGTCA AAGTCCCAGC CTTTCCCGGA ACCTGGCTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J
ss45661860	mCV22659100	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss147285156	ENSMUSSNP6351049	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J
rs32553580					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117010626 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14653	CpG island 14653	1928 bp proximal
Gm22980	predicted gene, 22980	664 bp downstream
Gm26330	predicted gene, 26330	1757 bp downstream
Rps8	ribosomal protein S8	407 bp downstream
Rr377051	regulatory region 377051	within coordinates
Rr598067	regulatory region 598067	1509 bp distal
Rr598068	regulatory region 598068	100 bp distal
Snord38a	small nucleolar RNA, C/D box 38A	1087 bp downstream
Tssr38607	transcription start site region 38607	397 bp upstream