rs32555851 SNP Detail

Summary

• ID
  rs32555851
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:32248424 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACACGCCT TTAATCCCAG
  CACCCAAGAG GCAGAAGCAG GTGGATCTCT GTGAATTATA CATTAGCCTG CTCTATACAG
  AGACACCCTG TCTAGAAAAT AACCACCACC ATAAAAAGAT TCCTAGGTTT CTATGTTAGC
  TACAGTCTAA ACTACTACCT TTGTGATGCC CATCTTCCCC AGAGAGGCCC TTGGTGTCTC
  Y
  TCCAGCTACG AAGTCCTTTT TTGGGGGCAT TTTATCTGCC AAGTCCAAAT ACCTATTTGA
  ACTTAAGTGT GTGTGCTAGC TTTTAATCAT TTTTCTCCTT AGAAGCACCT CAGCAGATGC
  ACAAGTTCAC CCATCCTCTT TCCTCTCAGT TATCTTCAAG TAAAAAATGC AAACAAATAC
  ATAAAAGTCT ACCCCCACCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48180346	NES12115714	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32555851					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48180346	NES12115714	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:32248424 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8190	CpG island 8190	815 bp proximal
Dynlt2b	dynein light chain Tctex-type 2B	507 bp downstream
Gm53948	predicted gene, 53948	342 bp upstream
Pcyt1a	phosphate cytidylyltransferase 1, choline, alpha isoform	1315 bp upstream
Rr404779	regulatory region 404779	1149 bp upstream
Rr514694	regulatory region 514694	199 bp distal
Rr514695	regulatory region 514695	536 bp proximal
Rr514696	regulatory region 514696	1063 bp proximal
Rr514697	regulatory region 514697	1122 bp proximal
Rr514698	regulatory region 514698	1654 bp proximal
Tssr137979	transcription start site region 137979	1001 bp upstream
Tssr137980	transcription start site region 137980	1289 bp upstream
Tssr137981	transcription start site region 137981	1379 bp upstream
Tssr137982	transcription start site region 137982	1417 bp upstream
Tssr137983	transcription start site region 137983	1437 bp upstream
Tssr137984	transcription start site region 137984	1486 bp upstream
Tssr137985	transcription start site region 137985	1619 bp upstream
Tssr137986	transcription start site region 137986	1684 bp upstream
Tssr140804	transcription start site region 140804	1472 bp downstream