rs32556512 SNP Detail

Summary

• ID
  rs32556512
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:34792525 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAGGTTGA TCGTTGTTCA
  TGCTGGTTGG TCAAGACTCT GAGAGCTCAG TCCGGGGTAA GCCTCCTTAC TGTGCTCAGC
  AGGCGGGTCC TGACTGTGAG TGACAGCCGC AAAGCGAAGC AGGGCCAGGG GGCTGAGCAG
  GTGGGCAGCA GTGTGGAAGC CCAGGGTGAC AGAAGATGCC TGTGGGAGAA AGCGAGGGCT
  R
  GCCAGGAGGC TGGGAGCACA CAGCCTGGCA GCTTAGGGAC CAGGACCTGT CAGATCCCAG
  AAACCCAAGA GGTGTTGTGA TGTTAGCAGC TTGAGGGCAG GCCAGTCTCC CCTGCCAATG
  GTACAGATAA GAAAGGAAAC CCCTTCCAAC CCTCAGGAGC CCTCACCCCT CCGGGGACCC
  GGGCCTACCC GCTTTTCCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss47680893	NES10255932	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs32556512					SNP	G	G	G	G	G	G	G	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47680893	NES10255932	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:34792525 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15757	CpG island 15757	1209 bp proximal
Mfsd10	major facilitator superfamily domain containing 10	within coordinates
Rr125078	regulatory region 125078	275 bp proximal
Rr367819	regulatory region 367819	1620 bp upstream
Tssr50667	transcription start site region 50667	452 bp upstream
Tssr50668	transcription start site region 50668	297 bp upstream
Tssr50669	transcription start site region 50669	248 bp upstream
Tssr50670	transcription start site region 50670	223 bp upstream
Tssr50671	transcription start site region 50671	158 bp upstream
Tssr50672	transcription start site region 50672	1308 bp downstream
Tssr50673	transcription start site region 50673	1809 bp downstream
Tssr50674	transcription start site region 50674	1886 bp downstream
Tssr50675	transcription start site region 50675	1926 bp downstream