rs32557244 SNP Detail

Summary

• ID
  rs32557244
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:34792433 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GATCGTTGTT CATGCTGGTT GGTCAAGACT CTGAGAGCTC
  AGTCCGGGGT AAGCCTCCTT ACTGTGCTCA GCAGGCGGGT CCTGACTGTG AGTGACAGCC
  R
  CAAAGCGAAG CAGGGCCAGG GGGCTGAGCA GGTGGGCAGC AGTGTGGAAG CCCAGGGTGA
  CAGAAGATGC CTGTGGGAGA AAGCGAGGGC TGGCCAGGAG                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47680895	NES10255931	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32557244					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47680895	NES10255931	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:34792433 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15757	CpG island 15757	1301 bp proximal
Mfsd10	major facilitator superfamily domain containing 10	within coordinates
Rr125078	regulatory region 125078	367 bp proximal
Rr367819	regulatory region 367819	1712 bp upstream
Tssr50667	transcription start site region 50667	360 bp upstream
Tssr50668	transcription start site region 50668	205 bp upstream
Tssr50669	transcription start site region 50669	156 bp upstream
Tssr50670	transcription start site region 50670	131 bp upstream
Tssr50671	transcription start site region 50671	66 bp upstream
Tssr50672	transcription start site region 50672	1400 bp downstream
Tssr50673	transcription start site region 50673	1901 bp downstream
Tssr50674	transcription start site region 50674	1978 bp downstream