rs32557246 SNP Detail

Summary

• ID
  rs32557246
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:34791595 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCGTTCCTG CACCCCCCCA
  CCCCCCCAGG CACAGAGCAG GCAGCTGGGG AAGGCTGCAG GAGGAAGTGC TAGCACTTAC
  CTGAGGCAGC CACCACCGGC CCCAACGCCC TGCCTAGGGC GCCTAGGCTC CGCAGTATGC
  CCATGATTGT GCCTTTTTGC CCTGGAGAAC CTGAAGGGAG AGGACTTGTC AGATGTCTGT
  Y
  AGCTCTCCTA CCCTGCATAG CCTTTTGGGG AGGACTCTCA CCATAACTGG AGACCATGGT
  GGACAGACCA GGCACCACAA CAGCAGCAGC TGGTGAGAGA GTATGGGAGG CACTTGTTAG
  CCTAGGAGAG GCACGAGGAT GTCTACCCCA GCTCTGGCAG AGCCCACTCA CCAAAGGAGT
  AGAGCATCAG TCCCAAGCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47680897	NES10255930	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32557246					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47680897	NES10255930	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:34791595 () rs orientation: forward

Symbol	Name	Function Class
Add1	adducin 1	1943 bp downstream
Mfsd10	major facilitator superfamily domain containing 10	within coordinates
Rr125078	regulatory region 125078	1205 bp proximal
Tssr50667	transcription start site region 50667	455 bp downstream
Tssr50668	transcription start site region 50668	606 bp downstream
Tssr50669	transcription start site region 50669	634 bp downstream
Tssr50670	transcription start site region 50670	702 bp downstream
Tssr50671	transcription start site region 50671	760 bp downstream