rs32557664 SNP Detail

Summary

• ID
  rs32557664
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:32250250 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAATGCGAG GGACTCTGAC
  CTCGGAGAGC ACGAGGCAGA GGCTGCGACG GGACCATGAC CGAGTAAGTA TGCAGCAGTG
  ACTACCCGGG GACTGACTGA TCGATGGATA GTGACTGAGG GGATTGATCC GAGGGACCAT
  GAAGCAGCGG CTGCGAGGGC GCGCTCACCG ACAAGCAGCG ACTTTGAGGG CTGACTTGGA
  R
  GAGAATGTAA GATCAGGAAT TGGGGGTGGT GCTTTGCACT TGTGTTTGTG TACAAAGTGT
  GAGTGAATGA GCGAGGGACC CACCCGGCAC AGGTCTTACG AAGAAACCGC ACTGGTGTGA
  GACCAGACCA GAGTTTGAAT TTTACGGGCA AACTTCCGTG GGTGAGAAAC TTAGTTCACC
  ACTGAGCTAG TGTCTTCGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48180360	NES12115641	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32557664					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48180360	NES12115641	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:32250250 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi8190	CpG island 8190			within coordinates
Pcyt1a	phosphate cytidylyltransferase 1, choline, alpha isoform			Intron
				mRNA-UTR
Rr404779	regulatory region 404779			376 bp downstream
Rr514695	regulatory region 514695			764 bp distal
Rr514696	regulatory region 514696			173 bp distal
Rr514697	regulatory region 514697			683 bp distal
Rr514698	regulatory region 514698			within coordinates
Tssr137979	transcription start site region 137979			814 bp downstream
Tssr137980	transcription start site region 137980			454 bp downstream
Tssr137981	transcription start site region 137981			442 bp downstream
Tssr137982	transcription start site region 137982			398 bp downstream
Tssr137983	transcription start site region 137983			378 bp downstream
Tssr137984	transcription start site region 137984			330 bp downstream
Tssr137985	transcription start site region 137985			152 bp downstream
Tssr137986	transcription start site region 137986			124 bp downstream
Tssr140804	transcription start site region 140804			315 bp upstream