rs32557666 SNP Detail

Summary

• ID
  rs32557666
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:32250351 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGATGGATAG TGACTGAGGG
  GATTGATCCG AGGGACCATG AAGCAGCGGC TGCGAGGGCG CGCTCACCGA CAAGCAGCGA
  CTTTGAGGGC TGACTTGGAG GAGAATGTAA GATCAGGAAT TGGGGGTGGT GCTTTGCACT
  TGTGTTTGTG TACAAAGTGT GAGTGAATGA GCGAGGGACC CACCCGGCAC AGGTCTTACG
  W
  AGAAACCGCA CTGGTGTGAG ACCAGACCAG AGTTTGAATT TTACGGGCAA ACTTCCGTGG
  GTGAGAAACT TAGTTCACCA CTGAGCTAGT GTCTTCGTCA GTAAGCGGAA AGTTCAGAGT
  TGGATTATGC CACCCAACTC TGAGTCCCAG TTTACTATTG GGCTGTGAAG ACAGTTTAGT
  TGGATGGCAA CTAACTAAAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48180362	NES12115642	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32557666					SNP	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48180362	NES12115642	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:32250351 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8190	CpG island 8190	within coordinates
Pcyt1a	phosphate cytidylyltransferase 1, choline, alpha isoform	Intron
Rr404779	regulatory region 404779	477 bp downstream
Rr514695	regulatory region 514695	865 bp distal
Rr514696	regulatory region 514696	274 bp distal
Rr514697	regulatory region 514697	784 bp distal
Rr514698	regulatory region 514698	within coordinates
Tssr137979	transcription start site region 137979	915 bp downstream
Tssr137980	transcription start site region 137980	555 bp downstream
Tssr137981	transcription start site region 137981	543 bp downstream
Tssr137982	transcription start site region 137982	499 bp downstream
Tssr137983	transcription start site region 137983	479 bp downstream
Tssr137984	transcription start site region 137984	431 bp downstream
Tssr137985	transcription start site region 137985	253 bp downstream
Tssr137986	transcription start site region 137986	225 bp downstream
Tssr140804	transcription start site region 140804	416 bp upstream